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Refereed Publications

2016

Ai, Y., K A. Cichy, J. B. Harte, J. D. Kelly, and P. K.W. Ng. 2016. Effects of extrusion cooking on the chemical composition and functional properties of dry bean powders. Food Chemistry 211:538–545. doi:10.1016/j.foodchem.2016.05.095

Hoyos-Villegas, V., E. M. Wright and J.D. Kelly. 2016. GGE biplot analysis of yield associations with root traits in a Mesoamerican bean diversity panel. Crop Sci. 56:1081-1094. doi:10.2135/cropsci2015.10.0609

Hoyos-Villegas, V., Q. Song, J.D. Kelly. 2016. Genomewide association analysis for drought tolerance and associated traits in common bean. The Plant Genome 9: doi:10.3835/plantgenome2015.12.0122

Hoyos-Villegas, V., Q. Song, E.M. Wright, S. E. Beebe and J.D. Kelly. 2016. Joint linkage QTL mapping for yield and agronomic traits in a composite map of three common bean RIL populations. Crop Sci. 56:2546–2563. doi:10.2135/cropsci2016.01.0063.

Isaacs, K.B., S.S. Snapp, J.D. Kelly and K. R. Chung. 2016. Farmer knowledge identifies competitive bean ideotype for maize-bean intercrop systems in Rwanda. Agriculture & Food Security 5:15. doi 10.1186/s40066-016-0062-8

Kelly, J.D., G.V. Varner, S. Hooper, K.A. Cichy, and E.M. Wright. 2016. Registration of ‘Samurai’ otebo bean. J. Plant Registrations 10:109-114. doi:10.3198/jpr2015.09.0051crc.

Mendoza, F.A, J. D. Kelly, and K. A. Cichy. 2016. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using machine vision. International Journal of Food Properties, doi:10.1080/10942912.2015.1136939.

Moghaddam, S.M., S. Mamidi, J. M. Osorno, R. Lee, M. Brick, J. Kelly, P. Miklas, C. Urrea, Q. Song, P. Cregan, J. Grimwood, J. Schmutz, and P. E. McClean. 2016. Genome-wide association study identifies candidate loci underlying agronomic traits in a Middle American diversity panel of common bean. The Plant Genome 9: doi: 10.3835/plantgenome2016.02.0012

Nakedde, T., F. J. Ibarra-Perez, C. Mukankusi, J. G. Waines, and J. D. Kelly. 2016. Mapping of QTL associated with Fusarium root rot resistance and root architecture traits in black beans. Euphytica 212: 51-63. doi: 10.1007/s10681-016-1755-6

Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, P. Paparu, P. Rubaihayo, J. D. Kelly, and J. Steadman. 2016. Prevalence and variability of the common bean rust in Uganda. African Journal of Agricultural Research. 11(49): 4990-4999. doi: 10.5897/AJAR2016.11600

Padder, B.A., K. Kamfwa, H.E. Awale and J. D. Kelly. 2016. Transcriptome profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum pathosystem. PLoS ONE 11(11): e0165823.doi:10.1371/journal.pone.0165823.

Zuiderveen, G.H., B. A. Padder, K. Kamfwa, Q. Song and J. D. Kelly. 2016. Genome-wide association study of anthracnose resistance in Andean beans. PLoS ONE 11(6): e0156391doi:10.1371/journal.pone.0156391

2015

Hoyos-Villegas, V., W. Mkwaila, P.B. Cregan and J.D. Kelly. 2015. QTL analysis of white mold avoidance in pinto bean (Phaseolus vulgaris). Crop Sci. 55:2116-2129. doi:10.2135/cropsci2015.02.0106.

Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association study of agronomic traits in common bean. The Plant Genome 8: doi:10.3835/plantgenome2014.09.0059.

Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association analysis of symbiotic nitrogen fixation in common bean. Theor. Appl. Genet. 128:1999-2017. doi. 10.1007/s00122-015-2562-5.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Alpena’ navy bean. J. Plant Registrations 9:10-14. doi:10.3198/jpr2014.04.0025crc.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Zenith’ black bean. J. Plant Registrations 9:15-20. doi:10.3198/jpr2014.05.0035crc.

Kelly, J.D., J. Trapp, P.N. Miklas, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Desert Song’ Flor de Junio and ‘Gypsy Rose’ Flor de Mayo common bean cultivars J. Plant Registrations 9:133-137. doi:10.3198/jpr2014.05.0028crc.

Sousa, L.L., A. O. Gonçalves, M. C. Gonçalves-Vidigal, G. F. Lacanallo, A. C. Fernandez, H. Awale and J. D. Kelly. 2015. Genetic characterization and mapping of anthracnose resistance of Corinthiano common bean landrace cultivar. Crop Sci. 55:1900-1910. doi:10.2135/cropsci2014.09.0604.

Burt, A.J., H. M. William, G. Perry, R. Khanal, K. P. Pauls, J. D. Kelly, A. Navabi. 2015. Candidate gene identification with SNP marker-based fine mapping of anthracnose resistance gene Co-4 in common bean. PLoS ONE 10(10): e0139450. doi:10.1371/journal.pone.0139450.

2014

Brisco, E.I., T.G. Porch, P.B. Cregan, and J.D. Kelly. 2014 Quantitative trait loci associated with resistance to Empoasca in common bean. Crop Sci. 54: doi: 10.2135/cropsci2014.02.0159.

Cichy, K.A., A. Fernandez, A. Kilian, J.D. Kelly, C.H. Galeano, S. Shaw, M. Brick, D. Hodkinson, and E. Troxtell. 2014. QTL analysis of canning quality and color retention in black beans (Phaseolus vulgaris L.). Molecular Breeding 33:139-154. doi: 10.1007/s11032-013-9940-y.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2014. Registration of ‘Powderhorn’ great northern bean. J. Plant Registrations 8:1-4. doi:10.3198/jpr2013.05.0020crc.

Mendoza, F.A., K. Cichy, R. Lu and J.D. Kelly. 2014. Evaluation of canning quality traits in black beans (Phaseolus vulgaris L.) by visible/near-infrared spectroscopy. Food Bioprocess Technol.7:2666-2678. doi: 10.1007/s11947-014-1285-y.

Miklas, P.N., J. D. Kelly, J. R. Steadman and S. McCoy. 2014. Registration of partial white mold resistant pinto bean germplasm line USPT-WM-12. J. Plant Registrations 8:183–186.

Mukeshimana, G., L. Butare, P.B. Cregan, M. W. Blair and J. D. Kelly. 2014. Quantitative trait loci associated with drought tolerance in common bean. Crop Sci. 54:923-938. doi: 10.2135/cropsci2013.06.0427.

Mukeshimana, G., A.L. Lasley, W.H. Loescher and J.D. Kelly. 2014. Identification of shoot traits related to drought tolerance in common bean seedlings. J. Amer. Soc. Hort. Sci. 139:299–309.

Sousa, L.L., A. S. Cruz, P. S. Vidigal Filho, V. A. Vallejo, J. D. Kelly and M.C. Gonçalves-Vidigal. 2014. Genetic mapping of the resistance allele Co-52 to Colletotrichum lindemuthianum in the common bean MSU 7-1 line. Aust. J. Crop Science 8:317-323.

Schmutz, J., P. McClean, J.D. Kelly, S.A. Jackson. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics.46:707-713. doi:10.1038/ng.3008.

Oblessuc, P.R., R. M. Baroni, G. da Silva Pereira, A. F. Chioratto, S.A.M. Carbonell, B. Briñez, L. Da Costa E Silva, A. A. F. Garcia, L.E.A. Camargo, J. D. Kelly, and L. L. Benchimol-Reis. 2014. Quantitative analysis of race-specific resistance to Colletotrichum lindemuthianum in common bean. Molecular Breeding 34:1313-1329. doi:10.1007/s11032-014-0118-z.

Musoni, A., J. Kayumba, L. Butare, F. Mukamuhirwa, E. Murwanashyaka, D. Mukankubana, J.D. Kelly, J. Ininda, and D. Gahakwa. 2014. Innovations to overcome staking challenges to growing climbing beans by smallholders in Rwanda. p. 129-136. In: B. Vanlauwe et al. (eds.), Challenges and Opportunities for Agricultural Intensification of the Humid Highland Systems of Sub-Saharan Africa. Springer International Publishing Switzerland doi 10.1007/978-3-319-07662-1_11.

Vandemark, G.J., M.A. Brick, J.M. Osorno, J.D. Kelly, and C.A. Urrea. 2014. Edible Grain Legumes. p. 87-123. In: S. Smith, B. Diers, J. Specht, & B. Carver (eds.). Yield Gains in Major U.S. Field crops. CSSA Special Pub. 33, Madison, WI.

2013

Ferreira, J.J., A. Campa, and J.D. Kelly. 2013. Organization of genes conferring resistance to anthracnose in common bean, pp. 151-181. In R. K. Varshney and R. Tuberosa (eds.) Translational Genomics for Crop Breeding, Volume I: Biotic Stresses. John Wiley & Sons, Inc.

Kelly, J.D. and K.A. Cichy. 2013. Dry Bean Breeding and Production Technologies, pp. 23-54. In: Dry Beans and Pulses: Production, Processing, and Nutrition. Editors: M. Siddiq, M.A. Uebersax, Wiley-Blackwell Publishing Co. Oxford U.K. doi: 10.1002/9781118448298.ch2.

Mukeshimana, G., Y. Ma, A. E. Walworth, G-q. Song, and J. D. Kelly. 2013. Factors influencing regeneration and Agrobacterium tumefaciens-mediated transformation of common bean (Phaseolus vulgaris L.). Plant Biotechnol. Rep. 7:59-70. doi:10.1007/s11816-012-0237-0.

Miklas, P.N., L. D. Porter, J. D. Kelly, and J. R. Myers 2013. Characterization of white mold disease avoidance in common bean. European J. Plant Pathology. 135:525–543. doi:10.1007/s10658-012-0153-8.

Porch, T.G., J. S. Beaver, D. G. Debouck, S. Jackson, J.D. Kelly, and H. Dempewolf. 2013. Use of wild relatives and closely related species to adapt common bean to climate change. Agronomy 3:433-461.

2012

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Rosetta’ pink bean. J. Plant Reg. 6: 229-232.

Kelly, J.D., G.V. Varner, W. Mkwaila, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Eldorado’ pinto bean. J. Plant Reg. 6: 233-237.

Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2012. Registration of ‘Snowdon’ white kidney bean. J. Plant Reg. 6: 239-242.

Heilig, J.A., and J.D. Kelly. 2012. Performance of dry bean genotypes grown under organic and conventional production systems in Michigan. Agron. J. 104:1485-1492.

2011

Mkwaila, W., K.A. Terpstra, M. Ender, and J.D. Kelly. 2011. Identification of QTL for resistance to white mold in wild and landrace germplasm of common bean. Plant Breeding130:665-672. doi:10.1111/j.1439-0523.2011.01876.x

Miklas, P.N., S. P. Singh, H. Terán, J. D. Kelly, and J. R. Smith. 2011. Registration of common bacterial blight resistant cranberry dry bean germplasm line USCR-CBB-20. J. Plant Reg. 5:98-102.

Wright, E.M., and J.D. Kelly. 2011: Mapping QTL for seed yield and canning quality following processing of black bean (Phaseolus vulgaris L.). Euphytica179:471–484. doi 10.1007/s10681-011-0369-2.

2010

Kelly, J.D., G.V. Varner, and E.M. Wright. 2010. Registration of Bellagio cranberry bean. J. Plant Reg. 4: 171-174.

Kelly, J.D., G.V.Varner, and B. Long. 2010. Registration of Santa Fe pinto bean. J. Plant Registrations 4:12-16.

Kwapata, K., R. Sabzikar, M. B. Sticklen, and J. D. Kelly. 2010. In vitro regeneration and morphogenesis studies in common bean. Plant Cell Tiss. Organ. Cult.: J. Plant Biotechnology. 100:97-105.

Musoni, A., P. Kimani, R. D. Narla, R. Buruchara and J. Kelly. 2010. Inheritance of Fusarium wilt (Fusarium oxysporum f. sp. phaseoli) resistance in climbing beans. African J. Agric. Res. 5(5):399-404.

2009

Cichy, K.A., M. W. Blair, C. H. Galeno-Mendoza, S. S. Snapp, and J. D. Kelly. 2009. QTL analysis of root architecture traits and low phosphorus tolerance in an Andean bean population. Crop Sci. 49:59-68.

Kelly, J.D., G.V.Varner, P. OBoyle, and B. Long. 2009. Registration of Zorro black bean. J. Plant Registrations 3:226-230.

Kelly, J.D., G.V.Varner, B. Roman, and B. Long. 2009. Registration of Fuji Otebo bean. J. Plant Registrations 3:223-225.

Tako, E., R.P. Glahn, J. M. Laparra, R.M. Welch, X. Lei, J.D. Kelly, M.A. Rutzke and D.D. Miller. 2009. Iron and zinc bioavailabilities to pigs from red and white beans (Phaseolus vulgaris L.) are similar. J. Agric. Food Chem. 57: 3134-3140.

Vallejo, V., and J. D. Kelly. 2009. New insights into the anthracnose resistance of common bean landrace G 2333. The Open Horticulture J. 2:29-33.

2008

Awale, H. E. Falconi, J. C. Villatoro and J.D. Kelly. 2008. Control y caracterizacion de aislamientos de Colletotrichum lindemuthianum de Ecuador y Guatemala. Revista Agronomía Mesoamericana 19: 1-6.

Ender, M., K. Terpstra, and J.D. Kelly. 2008. Marker-assisted selection for white mold resistance in common bean. Mol. Breed. 21:149-157.

Ernest, E.G., E. Falconí, E. Peralta and J. D. Kelly. 2008. Uso de una encuesta a agricultores para orientar el fitomejoramiento de frijol en Ecuador. Revista Agronomía Mesoamericana 19: 7-18.

Vallejo, V.A., and J. D. Kelly. 2008. Molecular tagging and genetic characterization of alleles at the Co-1 anthracnose resistance locus in common bean. ICFAI Univ. J. Genetics & Evolution 1:7-20. Available at SSRN: http://ssrn.com/abstract=1306249 External Link.

2007

Acosta-Gallegos, J.A., J.D. Kelly, and P. Gepts. 2007. Prebreeding in common bean and use of genetic diversity from wild germplasm. Crop Sci. 47(S3): S44-S59.

Ando, K., R. Grumet, K. Terpstra, and J. D. Kelly. 2007. Manipulation of plant architecture to enhance crop disease control. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition, and Natural Resources. Vol. 2. No. 026. 8pp.

Miklas, P.N., K.M. Larsen, K.A. Terpstra, D.C. Hauf, K.F. Grafton, and J.D. Kelly. 2007. QTL analysis of ICA Bunsi-derived resistance to white mold in a pinto x navy bean cross. Crop Sci. 47:174-179.

O Boyle, P. D., W. W. Kirk, and J. D. Kelly. 2007. Use of marker-assisted selection to breed for resistance to common bacterial blight in common bean. J. Amer. Soc. Hort. Sci. 132:381-386.

Pastor-Corrales, M.A., J.D. Kelly, J.R. Steadman, D.T. Lindgren, J.R. Stavely, and D.P. Coyne. 2007. Registration of six great northern bean germplasm lines developed for enhanced resistance to rust and bean common mosaic and necrosis potyviruses: BelMiNeb-RMR-8,-9,-10,-11,-12,-and -13. J. Plant Registrations 1:77-79.

Vidigal Filho, P.S., M.C. Gonçalves-Vidigal, J.D. Kelly, and W.W. Kirk. 2007. Sources of resistance to anthracnose in traditional common bean cultivars from Paraná, Brazil. J. Phytopathology 155:108-113.

2006

Gonçalves-Vidigal, M.C., and J.D. Kelly. 2006. Inheritance of anthracnose resistance in the common bean cultivar Widusa. Euphytica151:411-419.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2006. Registration of Sedona pink bean. Crop Sci 46: 2707-2708.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2006. Registration of Capri cranberry bean. Crop Sci 46: 2706-2707.

Miklas, P.N., J.D. Kelly, S.E. Beebe, and M. W. Blair. 2006. Common bean breeding for resistance against biotic and abiotic stresses: From classical to MAS breeding. Euphytica 147:105-131.

Miklas, P.N. K.F. Grafton, D. Hauf, and J. D. Kelly. 2006. Registration of partial white mold resistant pinto bean germplasm line USPT-WM-1. Crop Sci. 46: 2339.

2005

Caixeta, E.T., A. Borém, and J.D. Kelly. 2005. Development of microsatellite markers based on BAC common bean clones. Crop Breeding and Applied Biotechnology, 5(2):125-133.

Ender, M., and J.D. Kelly. 2005. Identification of QTL associated with white mold resistance in common bean. Crop Sci. 45:2482-2490.

Ernest, E.G., M.J. Bassett, and J.D. Kelly. 2005. A spontaneous mutation at a seedcoat pattern locus in the dark red kidney bean Red Hawk, which changes seed from self-colored to the partially colored virgarcus pattern. HortScience.40:57-59.

Ibarra-Pérez, F.J., J. A. Acosta-Gallegos, B. Cazares-Enriquez, R. Rosales-Serna, and J.D. Kelly. 2005. Registration of Flor de Mayo 2000 common bean. Crop Sci.45: 2657.

Kelly, J.D., G.L. Hosfield, E.G. Ernest, M. Uebersax, G.V. Varner, and J. Taylor. 2005. Redcoat Soldier Bean. HortScience 40:263-264.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2005. Registration of Condor black bean. Crop Sci. 45:795-796

Lee, C.D., K. A. Renner, D. Penner, R. Hammerschmidt, and J.D. Kelly. 2005. Glyphosate-resistant soybean management system effect on sclerotinia stem root. Weed Technol.19:580-588.

Mukeshimana, G., A. Pañeda, C. Rodriguez, J.J. Ferreira, R. Giraldez, and J.D. Kelly. 2005. Markers linked to the bc-3 gene conditioning resistance to bean common mosaic potyviruses in common bean. Euphytica 144:291-299.

Román-Avilés, B., and J.D. Kelly. 2005. Identification of quantitative trait loci conditioning resistance to Fusarium root rot in common bean. Crop Sci. 45:1881-1890.

2004

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, B. Cazares-Enriqez, A. Castillo-Rosales, R. Rosales-Serna, J. D. Kelly and S.P. Singh. 2004. Registration of Negro Vizcaya shiny black bean. Crop Sci. 44:1866-1867.

Frahm, M.A., J.C. Rosas, N. Mayek-Pérez, E. López-Salinas, J.A. Acosta-Gallegos, J.D. Kelly. 2004. Breeding Beans for Resistance to Terminal Drought in the Lowland Tropics. Euphytica 136: 223-232.

Hosfield, G.L., G.V. Varner, M.A. Uebersax, and J.D. Kelly. 2004. Registration of Merlot small red bean. Crop Sci. 44: 351-352.

Kelly, J.D. 2004. Advances in Common Bean Improvement: Some Case Histories with Broader Applications. Acta Hort. (ISHS) 637:99-122. http://www.actahort.org/books/637/637_11.htm External Link.

Kelly, J.D. and V. A. Vallejo. 2004. A comprehensive review of the major genes conditioning resistance to anthracnose in common bean. HortScience 39(6):1196-1207.

Melotto, M., M.F. Coelho, A. Pedrosa-Harand, J.D. Kelly, and L.E.A. Camargo. 2004. The anthracnose resistance locus Co-4 of common bean is located on chromosome 3 and contains putative disease resistance–related genes. Theor. Appl. Genet.109:690-699.

Román-Avilés, B., S.S. Snapp, and J.D. Kelly. 2004. Assessing root traits associated with root rot resistance in common bean. Field Crops Res. 86:147-156.

Rosales-Serna, R., J. Kohashi-Shibata, J.A. Acosta-Gallejos, C. Trejo-López, J. Ortiz-Cereceres, and J. D. Kelly. 2004. Biomass distribution, maturity acceleration and yield in drought-stressed common bean cultivars. Field Crops Res. 85:203-211.

2003

Beaver, J.S. Rosas, J.C., Myers, J., Acosta, J., Kelly, J.D., Nchimbi-Msolla, S., Misangu, R., Bokosi, J., Temple, S., Coyne, D.P. 2003. Contributions of the Bean/Cowpea CRSP to cultivar and germplasm development in common bean. Field Crops Res. 82:87-102.

Castellanos-Ramos, J.Z., H. Guzmán-Maldonado, J.D Kelly, and J.A. Acosta-Gallegos. 2003. Registration of Flor de Junio Marcela Common Bean. Crop Sci. 43:1121

Frahm, M.A., J.C. Rosas, N. Mayek-Pérez, E. López-Salinas, J.A. Acosta-Gallegos, J.D. Kelly. 2003. Resistencia a sequía terminal en frijol negro tropical. Agronomia Mesoamericana 14:143-150.

Kelly, J.D., P. Gepts, P.N. Miklas, and D.P. Coyne. 2003. Tagging and mapping of genes and QTL and molecular marker-assisted selection for traits of economic importance in bean and cowpea. Field Crops Res. 82:135-154.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, M. Ender and J. Taylor. 2003. Registration of Seahawk navy bean. Crop Sci. 43:2307-2308.

Kolkman, J.M. and J.D. Kelly. 2003. QTL conferring resistance and avoidance to white mold (Sclerotinia sclerotiorum) in common bean (Phaseolus vulgaris). Crop Sci 43:539-548.

de Mejía, E.G., S.H. Guzmán-Maldonado, J.A. Acosta-Gallegos, R. Reynoso-Camacho, E. Ramírez-Rodríguez, J.L. Pons-Hernández, M.M. González-Chavira, J.Z. Castellanos, and J.D. Kelly. 2003. Effect of cultivar and growing location on the trypsin inhibitors, tannin, and lectins of common beans (Phaseolus vulgaris L.) grown in the semiarid highlands of Mexico. J Agric. Food Chem. 51:5962-5966.

Miklas, P.N., J.D Kelly, and S.P. Singh. 2003. Registration of anthracnose-resistant pinto bean germplasm line USPT-ANT-1. Crop Sci. 43:1889-1890.

Snapp, S., W. Kirk, B. Román-Avilés, and J. Kelly. 2003. Root traits play a role in integrated management of Fusarium root rot in snap beans. HortScience 38:187-191.

2002

Kolkman, J.M. and J.D. Kelly. 2002. Agronomic traits affecting resistance to white mold in common bean Crop Sci. 42:693-699.

Miklas, P.N., and J. D. Kelly. 2002. Registration of two cranberry bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USCR-7 and USCR-9. Crop Sci. 42:673-674.

Miklas, P.N., A.N. Hang, J. D. Kelly, C.A. Strausbaugh, and R.L. Forster. 2002. Registration of three kidney bean germplasm lines resistant to bean common mosaic and necrosis potyviruses: USLK-2 Light Red Kidney, USDA-4 Dark Red Kidney, and USWK-6 White Kidney. Crop Sci. 42:674-675.

Posa-Macalincag, M.C.T., G.L. Hosfield, K.F. Grafton, M.A. Uebersax, and J.D. Kelly. 2002. Quantitative trait loci (QTL) analysis of canning quality traits in kidney bean (Phaseolus vulgaris L.). J. Amer. Soc. Hort. Sci. 127: 608-615.

2001

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, B. Cazares-Enriqez, P. Fernandez-Hernandez, A. Castillo-Rosales, and J.D.Kelly. 2001.Registration of Bayacora Pinto Bean. Crop Sci. 41:1645-1646.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, A. Castillo-Rosales, and J. D. Kelly. 2001. Registration of Negro Sahuatoba opaque black bean. Crop Sci. 41: 1646-1647.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, A. Castillo-Rosales, B. Cazares-Enriquez, P. Fernandez-H., and J. D. Kelly. 2001. Registration of Negro Altiplano common bean. Crop Sci. 41:1650.

Acosta-Gallejos, J.A., F.J. Ibarra-Perez, R. Rosales-Serna, P. Fernandez-Hernandez, A. Castillo-Rosales, and J. D. Kelly. 2001. Registration of Mestizo Pinto Bean. Crop Sci. 41: 1650-1651.

Hosfield, G.L., J.D. Kelly, and M.A. Uebersax. 2001. Erect small-red dry bean germplasm lines: ARS-R93344, ARS-R93346, ARS-R93349. HortScience 36:1341-1343.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2001. Registration of Jaguar black bean. Crop Sci. 41:1647

Melotto, M., and J.D. Kelly. 2001. Fine mapping of the Co-4 locus of common bean reveals a resistance gene candidate, COK-4, that encodes for a protein kinase. Theor Appl. Genet.103:508-517.

Schneider, K.A., K.F. Grafton, and J.D. Kelly. 2001. QTL analysis of resistance to Fusarium root rot in bean. Crop Sci. 41:535-542.

2000

Kelly, J.D. 2000. Remaking bean plant architecture for efficient production. Adv. Agron. 71:109-143.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 2000. Registration of Phantom black bean. Crop Sci. 40:572.

Kolkman, J.M., and J.D. Kelly. 2000. An indirect test using oxalate to determine physiological resistance to white mold in common bean. Crop Sci. 40:281-285.

Melotto, M., and J.D. Kelly. 2000. An allelic series at the Co-1 locus conditioning resistance to anthracnose in common bean of Andean origin. Euphytica 116:143-149.

Miklas, P.M., R.C. Larsen, R. Riley, and J.D. Kelly. 2000. Potential marker-assisted selection for bc-12 resistance to bean common mosaic potyvirus in common bean. Euphytica 116:211-219.

Schneider, K.A., and J.D. Kelly. 2000. A greenhouse screening protocol for Fusarium root rot in bean (Phaseolus vulgaris L.). HortScience 35:1095-1098.

1999

Balardin, R.S., J.J. Smith, and J.D. Kelly. 1999. Ribosomal DNA polymorphism in Colletotrichum lindemuthianum. Mycol. Res.103:841-848.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Kodiak' pinto bean. Crop Sci. 39:292-293.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Chinook 2000' light red kidney bean. Crop Sci. 39:293.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Beluga' alubia bean. Crop Sci. 39:294.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1999. Registration of 'Matterhorn' great northern bean. Crop Sci. 39:589-599.

1998

Balardin, R.S., and J.D. Kelly. 1998. Interaction among races of Colletotrichum lindemuthianum and diversity in Phaseolus vulgaris. J. Amer. Soc. Hort. Sci.123: 1038-1047.

Beaver, J.S., P.N. Miklas, J.D. Kelly, J.R. Steadman, and J.C. Rosas. 1998. Registration of PR9357-107 small red dry bean germplasm resistant to BCMV, BCMNV, and rust. Crop Sci. 38:1408-1409.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, and J. Taylor. 1998. Registration of 'Mackinac' navy bean. Crop Sci. 38:280.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, R.A. Long, and J. Taylor. 1998. Registration of 'Red Hawk' dark red kidney bean. Crop Sci. 38:280-281.

Kelly, J.D., and P.N. Miklas. 1998. The role of RAPD markers in breeding for disease resistance in common bean. Molecular Breeding 4:1-11.

Kelly, J.D., J. Kolkman, and K. Schneider. 1998. Breeding for yield in dry bean (Phaseolus vulgaris L.). Euphytica 102:343-356.

Miklas, P.N., K.F. Grafton, J.D. Kelly, H.F. Schwartz, and J.R. Steadman. 1998. Registration of our white mold resistant dry bean germplasm lines: I9365-3, I9365-5, I9365-31, and 92BG-7. Crop Sci. 38:1728.

Ramirez-Vallejo, P., and J.D. Kelly. 1998. Traits related to drought resistance in common bean. Euphytica 99:127-136.

Young, R.A., M. Melotto, R.O. Nodari, and J.D. Kelly. 1998. Marker assisted dissection of the oligogenic anthracnose resistance in common bean cultivar, G 2333. Theor. Appl. Genet. 96:87-94.

1997

Balardin, R.S., A.M. Jarosz, and J.D. Kelly. 1997. Virulence and molecular diversity in Colletotrichum lindemuthianum from South, Central and North America. Phytopathology 87:1184-1191.

Elia, F.M., G.L. Hosfield, J.D. Kelly, and M.A. Uebersax. 1997. Genetic analysis and interrelationships between traits for cooking time, water absorption, and protein and tannin content of Andean dry beans. J. Amer. Soc. Hort. Sci. 122:512-518.

Kelly, J.D. 1997. A review of varietal response to bean common mosaic potyvirus in Phaseolus vulgaris. Plant Varieties & Seeds 10:1-6.

Schneider, K.A., R. Rosales-Serna, F. Ibarra-Perez, B. Cazares-Enriquez, J. A. Acosta-Gallegos, P. Ramirez-Vallejo, N. Wassimi, and J.D. Kelly. 1997. Improving common bean performance under drought stress. Crop Sci. 37:43-50.

Schneider, K.A., M.E. Brothers, and J.D. Kelly. 1997. Marker assisted selection to improve drought resistance in common bean. Crop Sci. 37:51-60.

Walters, K.J., G.L. Hosfield, M.A. Uebersax, and J.D. Kelly. 1997. Navy bean canning quality: correlations, heritability estimates and randomly amplified polymorphic DNA markers associated with component traits. J. Amer. Soc. Hort. Sci. 122:338-343.

Young, R.A., and J.D. Kelly. 1997. RAPD markers linked to three major anthracnose resistance genes in common bean. Crop Sci. 37:940-946.

1996

Balardin, R.S. and J.D. Kelly. 1996. Identification of race 65-epsilon of bean anthracnose (Colletotrichum lindemuthianum) in Michigan. Plant Dis. 80:712.

Melotto, M., L. Afanador, and J.D. Kelly. 1996. Development of a SCAR marker linked to the I gene in common bean. Genome 39:1216-1219.

Miklas, P.N., L. Afanador, and J.D. Kelly. 1996. Recombination-facilitated RAPD marker-assisted selection for disease resistance in common bean. Crop Sci. 36:86-90.

Young, R.A. and J.D. Kelly. 1996. RAPD markers flanking the Are gene for anthracnose resistance in common bean. J. Amer. Soc. Hort. Sci. 121:37-41.

Young, R.A. and J.D. Kelly. 1996. Characterization of the genetic resistance to Colletotrichum lindemuthianum in common bean differential cultivars. Plant Dis. 80:650-654.

1995

Ali, M., L.O. Copeland, S.G. Elias, and J.D. Kelly. 1995. Relationship between genetic distance and heterosis for yield and morphological traits in winter canola (Brassica napus L.) Theor. Appl. Genet. 91:118-121.

Bauer, T.A., Renner, K.A., Penner, D., and Kelly, J.D. 1995. Pinto bean (Phaseolus vulgaris) varietal tolerance to Imazethapyr. Weed Science 43: 417-424.

Castellanos J.V., H. Guzman-Maldonado, J. Acosta-Gallegos and J.D. Kelly. 1995. Effect of hardshell on cooking time of common beans grown in the semiarid highlands of Mexico. J. Sci. Food Agric. 69:437-443.

Kelly, J.D. 1995. Use of Random Amplified Polymorphic DNA markers in breeding for major gene resistance to plant pathogens. HortScience 30:461-465.

Kelly, J.D., L. Afanador, and S.D. Haley. 1995. Pyramiding genes for resistance to Bean Common Mosaic Virus. Euphytica 82:207-212.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, L.K. Afanador, and J. Taylor. 1995. Registration of 'Newport' navy bean. Crop Sci. 35:1710-1711.

Hosfield, G.L., J.D. Kelly, M.J. Silbernagel, J.R. Stavely, M.W. Adams, M.A. Uebersax, and G. V. Varner. 1995. Eight small-red dry bean germplasm lines with upright architecture, narrow profile, and short vine growth habit. HortScience 30:1479-1482.

1994

Beaver, J.S. and J.D. Kelly. 1994. Comparison of selection methods for dry bean populations derived from crosses between gene pools. Crop Sci. 34:34-37.

Haley, S.D., P.N. Miklas, L. Afanador, and J.D. Kelly. 1994. Random Amplified Polymorphic DNA (RAPD) marker variability between and within gene pools of common bean. J. Amer. Soc. Hort. Sci. 119:122-125.

Haley, S.D., L.K. Afanador, P.N. Miklas, J.R. Stavely, and J.D. Kelly. 1994. Heterogeneous inbred populations are useful as sources of near-isogenic lines from RAPD marker localization. Theor. Appl. Genet. 88:337-342.

Haley, S.D., L.K. Afanador, and J.D. Kelly. 1994. Selection for monogenic resistance traits with coupling- and repulsion-phase RAPD markers. Crop Sci. 34:1061-1066.

Haley, S.D., L. Afanador, and J.D. Kelly. 1994. Identification and application of a Random Amplified Polymorphic DNA marker for the I gene (Potyvirus resistance) in common bean. Phytopathology 84:157-160.

Kelly, J.D., L. Afanador, S.D. Haley, P. Miklas. 1994. Uso de marcadores moleculares en el mejoramiento del frijol. Revista Agronomica Mesoamericana 5:1-7.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, M.E. Brothers, and J. Taylor. 1994. Registration of 'Huron' navy bean. Crop Sci. 34:1408-1409.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, S.D. Haley, and J. Taylor. 1994. Registration of 'Raven' black bean. Crop Sci. 34:1406-1407.

Kelly, J.D., G.L. Hosfield, G.V. Varner, M.A. Uebersax, R.A. Long, and J. Taylor. 1994. Registration of 'Isles' dark red kidney bean. Crop Sci. 34:1407-1408.

Kelly J.D., L. Afanador and L.S. Cameron. 1994. New races of Colletotrichum lindemuthianum in Michigan and implications in dry bean resistance breeding. Plant Disease 78:892-894.

Stavely, J.R., J.D. Kelly and K.F. Grafton. 1994. BelMiDak-rust-resistant navy dry bean germplasm lines. HortScience 29:709-711.

1993

Brothers, M.E. and Kelly, J.D. 1993. Allozyme evaluation of upright common bean genotypes. Euphytica 67:65-70.

Brothers, M.E. and J.D. Kelly. 1993. Interrelationship of plant architecture and yield components in the pinto bean ideotype. Crop Sci. 33:1234-1238.

Haley, S.D., Miklas, P.N., Stavely, J.R., Byrum, J., and J.D. Kelly. 1993. Identification of RAPD markers linked to a major rust resistance gene block in common bean. Theor. Appl. Gent. 86:505-512.

Miklas, P.N., Stavely, J.R., and J.D. Kelly. 1993. Identification and potential use of a molecular marker for rust resistance in common bean. Theor. Appl. Genet. 85:745-749.

1992

Kelly, J.D., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Miklas, P.N., and Taylor, J. 1992. Registration of 'Alpine' great northern bean. Crop Sci. 32:1509.

Kelly, J.D., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Wassimi, N., and Taylor, J. 1992. Registration of 'Aztec' pinto bean. Crop Sci. 32:1508.

Kelly, J.D., Adams, M.S., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., Ghaderi, A. and Taylor, J. 1992. Registration of 'Chinook' Light red kidney bean. Crop Sci. 32:492-493.

Nodari, R.O., Koinange, E.M.K., J.D. Kelly. and Gepts, P. 1992. Towards an integrated linkage map of common bean. I Development of genomic DNA probes and levels of restriction fragment length polymorphism. Theor. Appl. Genet. 84:186-192.

Acquaah, G., Adams, M.W., and J.D. Kelly. 1992. A factor analysis of plant variables associated with architecture and seed size in dry bean. Euphytica 60:171-177.

1991

Acquaah, G., Adams, M.W. and J.D.Kelly. 1991. Identification of effective indicators of erect plant architecture in dry beans. Crop Sci. 31:261-264

1990

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., and Taylor, J. 1990. Registration of 'Sierra' pinto bean. Crop Sci. 30:745‑746.

Ghaderi, A., J.D. Kelly, Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Uebersax, M.A., and Taylor, J. 1990. Registration of 'Blackhawk' tropical black bean. Crop Sci. 30:744‑745.

1989

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Varner, G.V., Beaver, J.S., and Uebersax, M.A. 1989. Registration of 'Mayflower' navy bean. Crop Sci. 29:1571.

Beaver, J. S. and J.D. Kelly. 1989. Yield compensation of bean genotypes grown in hill-plots. HortScience 24:137‑138.

1987

Kelly, J.D. and Adams, M.W. 1987. Phenotypic recurrent selection in ideotype breeding of pinto beans. Euphytica 36:69‑80.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Uebersax, M. and Ghaderi, A. 1987. Registration of 'Domino' and 'Black Magic' tropical black beans. Crop Sci. 27:363.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L., Uebersax, M. and Ghaderi, A. 1987. Registration of 'Isabella' light red kidney bean. Crop Sci. 27:363‑364.

Kelly, J.D., Adams, M.W. and Varner, G.V. 1987. Yield stability of determinate and indeterminate dry bean cultivars. Theor. Appl. Genet. 74:516‑521.

1986

Al‑Soboh, G., Srivastava, A.K., Burkhardt, T.H. and J.D. Kelly. 1986. A mixed‑integer linear programming (MILP) machinery selection model for navy bean production systems. Transactions of the ASAE 29:81‑84.

Adams, M.W., Saettler, A.W., Hosfield, G.L., Ghaderi, A., J.D. Kelly, and Uebersax, M.A. 1986. Registration of 'Swan Valley' and 'Neptune' navy beans. Crop Sci. 26:1080‑1081.

1985

Freytag, G.F., J.D. Kelly, Adams, M.W. Lopez Rosa, J., Beaver J. and Echavez Badel, R. 1985. Registration of two navy bean breeding lines, L226‑10 and L227‑1. Crop Sci. 25:714.

1984

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L. and Ghaderi, A. 1984. Registration of C‑20 navy bean. Crop Sci. 24:822.

Kelly, J.D., Adams, M.W., Saettler, A.W., Hosfield, G.L. and Ghaderi, A. 1984. Registration of Laker navy bean. Crop Sci. 24:1210.

Ghaderi, A., Johanson, A.G., Adams, M.W. and J.D. Kelly. 1984. A computerized system for storage, processing and retrieval of information for breeding of dry edible beans (Phaseolus vulgaris L.) HortScience 19:345‑348.

1975

Kelly, J.D. and Bliss, F.A. 1975. Heritability estimates of percentage seed protein and available methionine and correlation with yield in dry beans. Crop Sci. 15:753‑757.

Kelly, J.D. and Bliss, F.A. 1975. Quality factors affecting the nutritive value of bean seed protein. Crop Sci. 15:757‑760

BOOK CHAPTERS

Ferreira, J.J., A. Campa, and J.D. Kelly. 2013. Organization of Genes Conferring Resistance to Anthracnose in Common Bean, pp.?? In: Genomics Applications in Plant Breeding, Roberto Tuberosa, Rajeev Varshney (eds.), Wiley-Blackwell Pubs.

Kelly, J.D. and K.A. Cichy. 2012. Dry Bean Breeding and Production Technologies, pp. 23-54. In: Common Beans and Pulses: Production, Processing, and Nutrition. Muhamad Siddiq, Mark A. Uebersax(eds.), Wiley-Blackwell Publishing Co. Oxford U.K.

Roman-Avilés, B., J.M. Lewis and J.D. Kelly. 2011. Fusarium Genetic Control: A Long Term Strategy, pp. 65-108. In: Control of Fusarium Diseases, Fernando M. Alves-Santos, Julio J. Diez (eds.), ISBN: 978-81-308-0470-5.

Kelly, J.D., and V.A. Vallejo. 2005. QTL analysis of multigenic disease resistance in plant breeding. p. 21-48. In S. Tuzun and E. Bent (eds.), Multigenic and Induced Systemic Resistance in Plants. Springer, New York.

Kelly, J.D. 2000. Remaking bean plant architecture for efficient production. Advances in Agronomy 71:109-143.

Melotto, M., R.S. Balardin and J.D. Kelly. 2000. Host-pathogen interaction and variability of Colletotrichum lindemuthianum. In: D. Prusky, S. Freeman, and M.B. Dickman (eds.), pp 346-361. APS press St. Paul, MN.

Kelly, J.D., K.A. Schneider, and J.M. Kolkman. 1999. Breeding to improve yield. In: Developments in Plant Breeding Vol. 7. S.P. Singh (ed.), Common bean improvement in the Twenty First Century. Kluwer Acad. Pub. Dordrecht, The Netherlands.

Kelly, J.D., and P.N. Miklas. 1999. Marker-assisted selection. In: Developments in Plant Breeding Vol. 7. S.P. Singh (ed.), Common bean improvement in the Twenty First Century. Kluwer Acad. Pub. Dordrecht, The Netherlands.